C-Executables
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Exact Algorithms for Haplotype Assembly from Whole-Genome Sequence Data
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The program beats the previous best for the important Haplotype Assembly Problem.
It takes short time even on a single PC. In contrast, the previous best takes
long time on a PC cluster. The paper will appear in
Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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An Ultrafast Tool for Minimum Reticulate Networks.
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The program beats the previous bests for several fundamental problems related to
the construction of minimum reticulate networks from two or more phylogenetic trees.
The paper appeared in
Journal of Computational Biology. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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Mutation Region Detection for Closely Related Individuals without a Known Pedigree
Using High-Density Genotype Data.
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The program can help find locations of genes that cause genetic diseases.
The paper appeared in
IEEE/ACM Transactions on Computational Biology and
Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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A program for the closest substring problem and the planted (L,d)-motif problem.
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The program beats the previous bests. The paper appeared in
IEEE/ACM Transactions on Computational Biology and
Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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Programs for rSPR distances, hybrid numbers, and hybridization networks.
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The programs beat the previous bests. The paper appeared in
Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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Software for Reticulate Networks of Multiple Phylogenetic Trees.
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The program beats the previous bests. The paper appeared in
IEEE/ACM Transactions on Computational Biology and
Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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A Fast Tool for Minimum Hybridization Networks.
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The program beats the previous bests. The paper will appear in
BMC Bioinformatics. (Joint work with
Lusheng Wang
of City University of Hong Kong.)
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